How do milk’s natural microbiota and composition contribute to cheese quality?

Steve Labrie, Claude Champagne, Sylvie Turgeon, Yves Pouliot, Michel Britten, Daniel St-Gelais


  • Cheese quality depends on multiple factors, including herd management on the farm, control of the cheese-making technology used and the microbiota present in the
    cheesemaking environment.
  • The natural microbiota, also called microflora, of cheeses can come from many sources, but the most influential sources have not been identified to date.
  • The effect of the choice of sanitizers on the composition of milk’s natural microbiota and its persistence in the dairy industry is unknown.
  • The protein and mineral composition of milk varies according to the season and influences its cheesemaking performance.
  • Dosing techniques for two natural antimicrobial systems (lysozyme and lactoperoxidase) involved in dairy production have been developed and will be applied to cheese


The primary objective is to gain a deeper understanding of milk’s microbiological and chemical elements that influence cheese quality. More specifically:

  • To monitor and characterize the natural microbiota of dairy environments, from the farm to cheese;
  • To determine the effect of the natural microbiota on cheese texture;
  • To measure the impact of concentrated systems, mineralization and natural antimicrobial systems on proteolysis and evolution of the microbiota during cheese ripening: relationship with rheology.

Results and potential benefits

At the end of this project, we aim to provide recommendations to dairy farmers and processors on the influence of milk’s natural microbiota on the production of aromatic compounds. We also hope to provide information on desirable and undesirable secondary species in milk affecting the organoleptic qualities of cheeses. More specifically, a number of cheesemakers are currently in the process of collecting data that will support the addition of value-enhancing terms to their product labels (Appellation d’origine, Appellation de spécificité…) as the demonstration of uniqueness must be based on sound scientific evidence. Ultimately, we hope to identify microbial signatures related to different cheesemaking regions. The results of this research project will also provide a better understanding of the impact of demineralization on cheese texture during ripening. Texture changes are generally attributed to proteolysis, but this effect is confused with demineralization. The proposed experimental approach will make it possible to establish the respective contributions of the two phenomena. A comparative study of the physicochemical properties and cheese performance of summer and winter milks will also be conducted. This work aims to identify the causes of seasonal variations and propose appropriate technological solutions. Lactoperoxidase and lysozyme remain active, even after pasteurization, and their content in cheese is proportional to the amount of serum that they contain. Lactoferrin seems to be slightly concentrated in cheese which suggests that antimicrobial systems may affect the microbiota during ripening. Milk standardization could then help to modulate the ripening microbiota.  Two types of cheese will be studied: Cheddar and washed rind cheeses. A total of eight cheesemakers will be participating in this research project, four of which process more than one million litres of milk per year and four of which process less than one million litres per year.


Professionals trained

  • Typhaine Morvant: Detecting indigenous microorganisms and sensitivity to sanitizers.
  • Karl Coulombe: Influence of the natural microbiota on cheese texture.
  • Rachel Langlois-Deshaies: Effect of seasons and milk ultrafiltration on the content of natural antimicrobial systems in cheese.


Financial contributions

This project is funded as part of Agriculture and Agri-Food Canada’s Dairy Research Cluster 3 and Novalait and is administered by Dairy Farmers of Canada.


Summary of the project from the Dairy Research Cluster 3